Open the git bash program windows or the terminal mac and type the following. This means you can manage local git repositories stored on your mac using the same familiar features on github. Jenny bryan has a fantastic online book happy git and. Before we break, we are going to set up git and github which we will be using along with r and rstudio for the rest of the workshop.
Extract data from private github repository with rest api. For example, the git and github content of stat 545 eventually grew into its. There are many other ways to interact with github, including githubs desktop app or the command line here is jenny bryans list of git clients, but today we are going to work from rstudio. As industry expert jenny bryan explains in her white paper. In this twoday bootcamp, short tutorials will alternate with hands. Not happy with windows version of githubs git client hard to connect to rstudio. If you have no idea what im talking about, think of your hosting service as dropbox but much, much better. A knowledgeable git community is available to answer your questions. All slide content and descriptions are owned by their creators. Happy git provides opinionated instructions on how to. Sign up for your own profile on github, the best place to host code, manage projects, and build software alongside 40 million developers. Prime hints for running a data project in r github pages.
Now that youve got git and github set up on your mac, its time to learn how to use them. Thanks to alyssa frazee for helping create the homework problem that became the recommendation systems chapter and to amanda cox for providing the. Apr 12, 2016 this is a follow up post to the previous one about how to analyze github issue data with github rest api. If you also have the repository stored on github you can of course sync between the two. Presentations by jennifer jenny bryan speaker deck. To ensure reproducibility within a stable working directory tree. Stat 545 at ubc by jenny bryan advanced r by hadley wickham. There are already plenty of guides that explain the particular steps of getting git and github going on your mac in detail. It also offers integration with local nongithub git repositories. Also delivered elsewhere, such as the first mexican statistical association school in data science by jenny bryan twitter. Dive into the pro git book and learn at your own pace. Film is a collaborative art and takes a lot of communication and compromise. Reproducible workflow and version control with git and github.
Get a personal access token from and make it available in r sessions. Cloverleaf was the first of our miniapps and was included in the mantevo 1. The main author, jenny bryan, developed this version of stat. How to use git and github with r projects infoworld. Several of the tutorials we are working through are from a course that was taught by dale barr and lisa debruine.
Open the git bash program windows or the terminal mac and type the. This basically brings the git repository management features from github down into a standalone mac application. Im not going to reinvent the excellent wheel that she has already invented, so im only going to summarize her advice here. Jenny understands the importance of her job but also knows how the edit will work and when to let things go. Never shy to speak up but also aware of when to back down. Happy git and github for the user jennifer jenny bryan. Git allows groups of people to work on the same documents often code at the same time, and without stepping on each others toes. Chapter 4 github introduction to open data science. Using git and github with r, rstudio, and r markdown. If your repository at github is private then you need to get authenticated before accessing. Github for data scientists without the terminal sahir bhatnagar. This workshop is hosted by the sib swiss institute of bioinformatics and the institute of molecular life sciences at the university of zurich uzh data carpentry workshops are for any researcher who has data they want to analyze, and no prior computational experience is required.
Contribute to bryanmacfarlanedevmacos development by creating an account on github. Several free and commercial gui tools are available for the mac platform. Welcome to the casa0005 geographic information systems and science online pratical handbook. If you have no idea what im talking about, think of it as dropbox but much, much better. Github is an excellent site and a powerful tool that can make life so much easier. Sign in sign up instantly share code, notes, and snippets. They provide a home for your gitbased projects on the internet. Mar 18, 2018 jenny bryan is probably the first very high profile ruser i know whos been actively highlighting the importance of things that not many people talk about. Before we do the setup configuration, let me take a moment to talk about what git and github are. She proposes the very concise herehere but other methods are available such as the template or the projecttemplate packages. If you have trouble with these setup steps, i highly recommend checking out happy git and github for the user at by jenny bryan and jim hester. Jenny bryan, a professor of statistics and her profile makes clear that she is a woman. Rstudio will offer a git pane to help you make commits, view history and diffs. I strongly recommend reading these setup instructions by jenny bryan for macwindowslinux and the troubleshooting section.
There is an updated version of this post for os x 10. Slides used in various gitgithubrrstudiormd workshops in 2016 and 2017. While the steps below should still work, i recommend checking out the new guide if you are running 10. Download the latest versions of the best mac apps at safe and trusted macupdate. Jun 23, 2011 yesterday github for mac was announced by the good folks over at github. A convenient way to get the tools needed for compilation is to install xcode. Aug, 2019 if you have trouble with these setup steps, i highly recommend checking out happy git and github for the user at by jenny bryan and jim hester. See youtube video for installing r, rstudio and rmarkdown at download r from download rstudio desktop. Download git if using a mac, may already be installed set up a github account. Happy git and github for the user by jennifer bryan is licensed under a creative commons. Thanks to peter aldhous from whom i borrowed ideas for the principles of data visualization section and jenny bryan for writing happy git and github for the user, which influenced our git chapters. Using version control for package development means that you can easily revert to previous package versions, collaborate with multiple developers, and record reasons for the changes that are made.
Jenny bryan offers a helpful tutorial for the r user. Version control is a tool that allows you to keep track of changes to a number of files. If youre new to github, check out the extremely excellent materials available in jenny bryans course at ubc. Happy git and github for the user by jennifer bryan is licensed under a creative commons attributionnoncommercial 4. A number of the book chapters and other resources we are reading were written by hadley wickham, danielle navarro, jenny bryan, jim hester, kieran healy, and andy fields. Datacamp is another great place to start learning online. It also offers integration with local non github git repositories. Git for mac in addition to jenny bryans instructions at. Today, well interface with github from our local computers using rstudio. Jenny bryan, carlos anderson, bernhard konrad, justin ely, victor ng, jonah duckles what. This website is hosted on github and holds all the practical instructions and data. Women are excellent coders, according to github research. Easy going, a people person and an editors script supervisor.
Our goal is to help scientists and engineers become more productive by teaching them basic computing skills like program design, version control, testing, and task automation. Git is easy to learn although it can take a lot to. For advanced users, i strongly recommend pablos fall 2017 usc measurement models and statistical computing course, benjamin soltoffs u of chicago computing for the social sciences course or jenny bryans u of british columbia stat 545 course. Now that you have downloaded git, its time to start using it. Developed by hadley wickham, jennifer bryan, rstudio. Github desktop is only available for windows and mac.
1586 36 532 560 1507 325 1281 1512 1556 836 873 488 291 1553 1261 628 1500 1311 669 703 1246 1346 627 1464 1515 1281 546 1351 602 420 966 630 1106 851 379 956 1424 425 270 1474 1261 1037 1134 1067 411 275 1146 1016 887